2024

·       S Sultan, S Devi, SN Mueller, J Textor. A parallelized cellular Potts model that enables simulations at tissue scale. 2023. arXiv preprint arXiv:2312.09317.

·       Horsnell HL, Cao WH, Belz GT, Mueller SN*, Alexandre YO*. The transcription factor SpiB regulates the fibroblastic reticular cell network and CD8+ T-cell responses in lymph nodes. Immunol Cell Biol. 2024 Mar 5. doi: 10.1111/imcb.12740. PMID: 38441326.

2023

·       Park SL, Christo SN, Wells AC, Gandolfo LC, Zaid A, Alexandre YO, Burn TN, Schröder J, Collins N, Han SJ, Guillaume SM, Evrard M, Castellucci C, Davies B, Osman M, Obers A, McDonald KM, Wang H, Mueller SN, Kannourakis G, Berzins SP, Mielke LA, Carbone FR, Kallies A, Speed TP, Belkaid Y, Mackay LK. Divergent molecular networks program functionally distinct CD8+ skin-resident memory T cells. Science. 2023 Dec;382(6674):1073-1079. doi: 10.1126/science.adi8885. PMID: 38033053.  

·       Alexandre YO, Mueller SN. Splenic stromal niches in homeostasis and immunity. Nat Rev Immunol. 2023 Nov;23(11):705-719. doi: 10.1038/s41577-023-00857-x.  PMID: 36973361. 

·       D'Rozario J, Knoblich K, Lütge M, Shibayama CP, Cheng HW, Alexandre YO, Roberts D, Campos J, Dutton EE, Suliman M, Denton AE, Turley SJ, Boyd RL, Mueller SN, Ludewig B, Heng TSP, Fletcher AL. Fibroblastic reticular cells provide a supportive niche for lymph node-resident macrophages. Eur J Immunol. 2023 Sep;53(9):e2250355. doi: 10.1002/eji.202250355. PMID: 36991561. 

·       Downie LE*, Zhang X, Wu M, Karunaratne S, Loi JK, Senthil K, Arshad S, Bertram K, Cunningham AL, Carnt N, Mueller SN*, Chinnery HR*. Redefining the human corneal immune compartment using dynamic intravital imaging. Proc Natl Acad Sci U S A. 2023 Aug;120(31):e2217795120. doi: 10.1073/pnas.2217795120. PMID: 37487076; PMCID: PMC10400993. 

·       Monkman J, Kim H, Mayer A, Mehdi A, Matigian N, Cumberbatch M, Bhagat M, Ladwa R, Mueller SN, Adams MN, O'Byrne K, Kulasinghe A. Multi-omic and spatial dissection of immunotherapy response groups in non-small cell lung cancer. Immunology. 2023 Aug;169(4):487-502. doi: 10.1111/imm.13646. PMID: 37022147. 

·       Evrard M, Becht E, Fonseca R, Obers A, Park SL, Ghabdan-Zanluqui N, Schroeder J, Christo SN, Schienstock D, Lai J, Burn TN, Clatch A, House IG, Beavis P, Kallies A, Ginhoux F, Mueller SN, Gottardo R, Newell EW, Mackay LK. Single-cell protein expression profiling resolves circulating and resident memory T-cell diversity across tissues and infection contexts. Immunity. 2023 Jul 11;56(7):1664-1680.e9. doi: 10.1016/j.immuni.2023.06.005. PMID: 37392736.

2022

·       Alexandre YO, Schienstock D, Lee HJ, Gandolfo LC, Williams CG, Devi S, Pal B, Groom JR, Cao W, Christo SN, Gordon CL, Starkey G, D'Costa R, Mackay LK, Haque A, Ludewig B, Belz GT, Mueller SN. A diverse fibroblastic stromal cell landscape in the spleen directs tissue homeostasis and immunity. Sci Immunol. 2022 Jan 7;7(67):eabj0641. doi: 10.1126/sciimmunol.abj0641. PMID: 34995096. 

·       Alexandre YO, Mueller SN. An optimized protocol for the isolation of rare stromal cell populations from the mouse spleen. STAR Protoc. 2022 Dec 16;3(4):101923. doi: 10.1016/j.xpro.2022.101923. PMID: 36595952; PMCID: PMC9768415. 

·       Fonseca R, Burn TN, Gandolfo LC, Devi S, Park SL, Obers A, Evrard M, Christo SN, Buquicchio FA, Lareau CA, McDonald KM, Sandford SK, Zamudio NM, Zanluqui NG, Zaid A, Speed TP, Satpathy AT, Mueller SN, Carbone FR, Mackay LK. Runx3 drives a CD8+ T cell tissue residency program that is absent in CD4+ T cells. Nat Immunol. 2022 Aug;23(8):1236-1245. doi: 10.1038/s41590-022-01273-4. PMID: 35882933. 

·       Vourc'h M, Roquilly A, Foucher A, Retiere C, Feuillet F, Devi S, McWilliam HEG, Braudeau C, Bourreille G, Hachani A, O'Kane D, Mueller SN, Ischia J, Roussel JC, Rigal JC, Josien R, Rozec B, Villadangos JA, Asehnoune K. Transfusion-Related Renal Dysfunction After Cardiac Surgery: The Role of Myeloid-Related Protein_14 in Neutrophil-Mediated Tubular Damage. JACC Basic Transl Sci. 2022 Jun 1;7(7):627-638. doi: 10.1016/j.jacbts.2022.02.019. PMID: 35958696; PMCID: PMC9357562. 

·       Loi JK, Alexandre YO, Senthil K, Schienstock D, Sandford S, Devi S, Christo SN, Mackay LK, Chinnery HR, Osborne PB, Downie LE, Sloan EK, Mueller SN. Corneal tissue-resident memory T cells form a unique immune compartment at the ocular surface. Cell Rep. 2022 May 24;39(8):110852. doi: 10.1016/j.celrep.2022.110852. PMID: 35613584. 

·       Langley WA, Wieland A, Ahmed H, Rasheed MAU, Davis CW, Sewatanon J, Mueller SN, Shlomchik MJ, Zarnitsyna VI, Antia R, Ahmed R. Persistence of Virus-Specific Antibody after Depletion of Memory B Cells. J Virol. 2022 May 11;96(9):e0002622. doi: 10.1128/jvi.00026-22. PMID: 35404084; PMCID: PMC9093124. 

·       Johnson DN, Ruan Z, Petley EV, Devi S, Holz LE, Uldrich AP, Mak JYW, Hor JL, Mueller SN, McCluskey J, Fairlie DP, Darcy PK, Beavis PA, Heath WR, Godfrey DI. Differential location of NKT and MAIT cells within lymphoid tissue. Sci Rep. 2022 Mar 8;12(1):4034. doi: 10.1038/s41598-022-07704-4. PMID: 35260653; PMCID: PMC8904549. 

·       Mueller SN. Neural control of immune cell trafficking. J Exp Med. 2022 Mar 7;219(3):e20211604. doi: 10.1084/jem.20211604. PMID: 35195682; PMCID: PMC8932541. 

·       Schienstock D, Mueller SN. Moving beyond velocity: Opportunities and challenges to quantify immune cell behavior. Immunol Rev. 2022 Mar;306(1):123-136. doi: 10.1111/imr.13038. PMID: 34786722. 

·       Camara A, Lavanant AC, Abe J, Desforges HL, Alexandre YO, Girardi E, Igamberdieva Z, Asano K, Tanaka M, Hehlgans T, Pfeffer K, Pfeffer S, Mueller SN, Stein JV, Mueller CG. CD169+ macrophages in lymph node and spleen critically depend on dual RANK and LTbetaR signaling. Proc Natl Acad Sci U S A. 2022 Jan 18;119(3):e2108540119. doi: 10.1073/pnas.2108540119. PMID: 35031565; PMCID: PMC8784161. 

·       Evrard M, Wynne-Jones E, Peng C, Kato Y, Christo SN, Fonseca R, Park SL, Burn TN, Osman M, Devi S, Chun J, Mueller SN, Kannourakis G, Berzins SP, Pellicci DG, Heath WR, Jameson SC, Mackay LK. Sphingosine 1-phosphate receptor 5 (S1PR5) regulates the peripheral retention of tissue-resident lymphocytes. J Exp Med. 2022 Jan 3;219(1):e20210116. doi: 10.1084/jem.20210116. PMID: 34677611; PMCID: PMC8546662. 

2021

·       Wilson KR, Jenika D, Blum AB, Macri C, Xu B, Liu H, Schriek P, Schienstock D, Francis L, Makota FV, Ishido S, Mueller SN, Lahoud MH, Caminschi I, Edgington-Mitchell LE, Villadangos JA, Mintern JD. MHC Class II Ubiquitination Regulates Dendritic Cell Function and Immunity. J Immunol. 2021 Nov 1;207(9):2255-2264. doi: 10.4049/jimmunol.2001426. PMID: 34599081. 

·       Zhou P, Chen J, He J, Zheng T, Yunis J, Makota V, Alexandre YO, Gong F, Zhang X, Xie W, Li Y, Shao M, Zhu Y, Sinclair JE, Miao M, Chen Y, Short KR, Mueller SN, Sun X, Yu D, Li Z. Low-dose IL-2 therapy invigorates CD8+ T cells for viral control in systemic lupus erythematosus. PLoS Pathog. 2021 Oct 7;17(10):e1009858. doi: 10.1371/journal.ppat.1009858. PMID: 34618873; PMCID: PMC8525737. 

·       Mueller SN, Sloan EK. Neuroimmune interactions at the crossroads of health and disease. Immunol Cell Biol. 2021 Oct;99(9):922-923. doi: 10.1111/imcb.12502. PMID: 34606127.  22: Ghazanfari N, Gregory JL, Devi S, Fernandez-Ruiz D, Beattie L, Mueller SN, Heath WR. CD8+ and CD4+ T Cells Infiltrate into the Brain during Plasmodium berghei ANKA Infection and Form Long-Term Resident Memory. J Immunol. 2021 Sep 15;207(6):1578-1590. doi: 10.4049/jimmunol.2000773. PMID: 34400523. 

·       Christo SN, Evrard M, Park SL, Gandolfo LC, Burn TN, Fonseca R, Newman DM, Alexandre YO, Collins N, Zamudio NM, Souza-Fonseca-Guimaraes F, Pellicci DG, Chisanga D, Shi W, Bartholin L, Belz GT, Huntington ND, Lucas A, Lucas M, Mueller SN, Heath WR, Ginhoux F, Speed TP, Carbone FR, Kallies A, Mackay LK. Discrete tissue microenvironments instruct diversity in resident memory T cell function and plasticity. Nat Immunol. 2021 Sep;22(9):1140-1151. doi: 10.1038/s41590-021-01004-1. PMID: 34426691. 

·       Devi S, Alexandre YO, Loi JK, Gillis R, Ghazanfari N, Creed SJ, Holz LE, Shackleford D, Mackay LK, Heath WR, Sloan EK, Mueller SN. Adrenergic regulation of the vasculature impairs leukocyte interstitial migration and suppresses immune responses. Immunity. 2021 Jun 8;54(6):1219-1230.e7. doi: 10.1016/j.immuni.2021.03.025. PMID: 33915109. 

·       Tantalo DG, Oliver AJ, von Scheidt B, Harrison AJ, Mueller SN, Kershaw MH, Slaney CY. Understanding T cell phenotype for the design of effective chimeric antigen receptor T cell therapies. J Immunother Cancer. 2021 May;9(5):e002555. doi: 10.1136/jitc-2021-002555. PMID: 34035114; PMCID: PMC8154965. 

·       Bastow CR, Bunting MD, Kara EE, McKenzie DR, Caon A, Devi S, Tolley L, Mueller SN, Frazer IH, Harvey N, Condina MR, Young C, Hoffmann P, McColl SR, Comerford I. Scavenging of soluble and immobilized CCL21 by ACKR4 regulates peripheral dendritic cell emigration. Proc Natl Acad Sci U S A. 2021 Apr 27;118(17):e2025763118. doi: 10.1073/pnas.2025763118. PMID: 33875601; PMCID: PMC8092586. 

·       Duckworth BC, Lafouresse F, Wimmer VC, Broomfield BJ, Dalit L, Alexandre YO, Sheikh AA, Qin RZ, Alvarado C, Mielke LA, Pellegrini M, Mueller SN, Boudier T, Rogers KL, Groom JR. Effector and stem-like memory cell fates are imprinted in distinct lymph node niches directed by CXCR3 ligands. Nat Immunol. 2021 Apr;22(4):434-448. doi: 10.1038/s41590-021-00878-5. PMID: 33649580. 

·       Dawson CA, Mueller SN, Lindeman GJ, Rios AC, Visvader JE. Intravital microscopy of dynamic single-cell behavior in mouse mammary tissue. Nat Protoc. 2021 Apr;16(4):1907-1935. doi: 10.1038/s41596-020-00473-2. PMID: 33627843. 

2020

·       Alexandre YO, Devi S, Park SL, Mackay LK, Heath WR, Mueller SN. Systemic Inflammation Suppresses Lymphoid Tissue Remodeling and B Cell Immunity during Concomitant Local Infection. Cell Rep. 2020 Dec 29;33(13):108567. doi: 10.1016/j.celrep.2020.108567. PMID: 33378682. 

·       Kato Y, Steiner TM, Park HY, Hitchcock RO, Zaid A, Hor JL, Devi S, Davey GM, Vremec D, Tullett KM, Tan PS, Ahmet F, Mueller SN, Alonso S, Tarlinton DM, Ploegh HL, Kaisho T, Beattie L, Manton JH, Fernandez-Ruiz D, Shortman K, Lahoud MH, Heath WR, Caminschi I. Display of Native Antigen on cDC1 That Have Spatial Access to Both T and B Cells Underlies Efficient Humoral Vaccination. J Immunol. 2020 Oct 1;205(7):1842-1856. doi: 10.4049/jimmunol.2000549. PMID: 32839238; PMCID: PMC7504891. 

·       Dawson CA, Pal B, Vaillant F, Gandolfo LC, Liu Z, Bleriot C, Ginhoux F, Smyth GK, Lindeman GJ, Mueller SN, Rios AC, Visvader JE. Tissue-resident ductal macrophages survey the mammary epithelium and facilitate tissue remodelling. Nat Cell Biol. 2020 May;22(5):546-558. doi: 10.1038/s41556-020-0505-0. PMID: 32341550.

2019

·       Ugur M, Mueller SN. T cell and dendritic cell interactions in lymphoid organs: More than just being in the right place at the right time. Immunol Rev. 2019 May;289(1):115-128. doi: 10.1111/imr.12753. PMID: 30977200. 

·       Mueller SN. IL-17 instructs lymphoid stromal cells. Nat Immunol. 2019 May;20(5):524-526. doi: 10.1038/s41590-019-0375-4. PMID: 30962592. 

·       Rios AC, Capaldo BD, Vaillant F, Pal B, van Ineveld R, Dawson CA, Chen Y, Nolan E, Fu NY; 3DTCLSM Group; Jackling FC, Devi S, Clouston D, Whitehead L, Smyth GK, Mueller SN, Lindeman GJ, Visvader JE. Intraclonal Plasticity in Mammary Tumors Revealed through Large-Scale Single-Cell Resolution 3D Imaging. Cancer Cell. 2019 Apr 15;35(4):618-632.e6. doi: 10.1016/j.ccell.2019.02.010. Erratum in: Cancer Cell. 2019 Jun 10;35(6):953. PMID: 30930118.

·       Farnsworth RH, Karnezis T, Maciburko SJ, Mueller SN, Stacker SA. The Interplay Between Lymphatic Vessels and Chemokines. Front Immunol. 2019 Apr 12;10:518. doi: 10.3389/fimmu.2019.00518. PMID: 31105685; PMCID: PMC6499173. 

·       Park SL, Buzzai A, Rautela J, Hor JL, Hochheiser K, Effern M, McBain N, Wagner T, Edwards J, McConville R, Wilmott JS, Scolyer RA, Tüting T, Palendira U, Gyorki D, Mueller SN, Huntington ND, Bedoui S, Hölzel M, Mackay LK, Waithman J, Gebhardt T. Tissue-resident memory CD8+ T cells promote melanoma- immune equilibrium in skin. Nature. 2019 Jan;565(7739):366-371. doi: 10.1038/s41586-018-0812-9. Erratum in: Nature. 2019 Feb;566(7745):E10. PMID: 30598548. 

2018

·       Ghazanfari N, Mueller SN, Heath WR. Cerebral Malaria in Mouse and Man. Front Immunol. 2018 Sep 10;9:2016. doi: 10.3389/fimmu.2018.02016. PMID: 30250468; PMCID: PMC6139318. 

·       Alexandre YO, Mueller SN. Stromal cell networks coordinate immune response generation and maintenance. Immunol Rev. 2018 May;283(1):77-85. doi: 10.1111/imr.12641. PMID: 29664562. 

·       Park SL, Zaid A, Hor JL, Christo SN, Prier JE, Davies B, Alexandre YO, Gregory JL, Russell TA, Gebhardt T, Carbone FR, Tscharke DC, Heath WR, Mueller SN*, Mackay LK*. Local proliferation maintains a stable pool of tissue-resident memory T cells after antiviral recall responses. Nat Immunol. 2018 Feb;19(2):183-191. doi: 10.1038/s41590-017-0027-5. PMID: 29311695. 

2017

·       Krishnaswamy JK, Gowthaman U, Zhang B, Mattsson J, Szeponik L, Liu D, Wu R, White T, Calabro S, Xu L, Collet MA, Yurieva M, Als√©n S, Fogelstrand P, Walter A, Heath WR, Mueller SN, Yrlid U, Williams A, Eisenbarth SC. Migratory CD11b+ conventional dendritic cells induce T follicular helper cell- dependent antibody responses. Sci Immunol. 2017 Dec 1;2(18):eaam9169. doi: 10.1126/sciimmunol.aam9169. PMID: 29196450; PMCID: PMC7847246. 

·       Williams SP, Odell AF, Karnezis T, Farnsworth RH, Gould CM, Li J, Paquet- Fifield S, Harris NC, Walter A, Gregory JL, Lamont SF, Liu R, Takano EA, Nowell CJ, Bower NI, Resnick D, Smyth GK, Coultas L, Hogan BM, Fox SB, Mueller SN, Simpson KJ, Achen MG, Stacker SA. Genome-wide functional analysis reveals central signaling regulators of lymphatic endothelial cell migration and remodeling. Sci Signal. 2017 Oct 3;10(499):eaal2987. doi: 10.1126/scisignal.aal2987. PMID: 28974649. 

·       Zaid A, Hor JL, Christo SN, Groom JR, Heath WR, Mackay LK, Mueller SN. Chemokine Receptor-Dependent Control of Skin Tissue-Resident Memory T Cell Formation. J Immunol. 2017 Oct 1;199(7):2451-2459. doi: 10.4049/jimmunol.1700571. PMID: 28855310. 

·       Mueller SN. Spreading the load: Antigen transfer between migratory and lymph node-resident dendritic cells promotes T-cell priming. Eur J Immunol. 2017 Oct;47(10):1798-1801. doi: 10.1002/eji.201747248. PMID: 28845904. 

·       Alexandre YO, Mueller SN. Isolation and Analysis of Stromal Cell Populations from Mouse Lymph Nodes. Bio Protoc. 2017 Aug 20;7(16):e2445. doi: 10.21769/BioProtoc.2445. PMID: 34541165; PMCID: PMC8413576. 

·       Mueller SN. Grand Challenges in Immunological Memory. Front Immunol. 2017 Apr 5;8:385. doi: 10.3389/fimmu.2017.00385. PMID: 28424700; PMCID: PMC5380680. 

·       Hor JL, Heath WR, Mueller SN. Neutrophils are dispensable in the modulation of T cell immunity against cutaneous HSV-1 infection. Sci Rep. 2017 Jan 23;7:41091. doi: 10.1038/srep41091. PMID: 28112242; PMCID: PMC5253768. 

·       Gregory JL, Walter A, Alexandre YO, Hor JL, Liu R, Ma JZ, Devi S, Tokuda N, Owada Y, Mackay LK, Smyth GK, Heath WR, Mueller SN. Infection Programs Sustained Lymphoid Stromal Cell Responses and Shapes Lymph Node Remodeling upon Secondary Challenge. Cell Rep. 2017 Jan 10;18(2):406-418. doi: 10.1016/j.celrep.2016.12.038. PMID: 28076785. 

2016

·       Fernandez-Ruiz D, Ng WY, Holz LE, Ma JZ, Zaid A, Wong YC, Lau LS, Mollard V, Cozijnsen A, Collins N, Li J, Davey GM, Kato Y, Devi S, Skandari R, Pauley M, Manton JH, Godfrey DI, Braun A, Tay SS, Tan PS, Bowen DG, Koch-Nolte F, Rissiek B, Carbone FR, Crabb BS, Lahoud M, Cockburn IA, Mueller SN, Bertolino P, McFadden GI, Caminschi I, Heath WR. Liver-Resident Memory CD8+ T Cells Form a Front-Line Defense against Malaria Liver-Stage Infection. Immunity. 2016 Oct 18;45(4):889-902. doi: 10.1016/j.immuni.2016.08.011. Erratum in: Immunity. 2019 Oct 15;51(4):780. PMID: 27692609. 

·       Hor JL, Mueller SN. Skin TRITC Painting to Track Dendritic Cells Migrating to the Lymph Nodes. 2016. Bio Protocol. 6(18), e1939. 

·       Hor JL, Mueller SN. Imaging Thick Lymph Node Tissue Sections. 2016. Bio Protocol. 6(18): e1938. 

·       Bedoui S, Heath WR, Mueller SN. CD4+ T-cell help amplifies innate signals for primary CD8+ T-cell immunity. Immunol Rev. 2016 Jul;272(1):52-64. doi: 10.1111/imr.12426. PMID: 27319342. 

·       Rouse BT, Mueller SN. Some vexations that challenge viral immunology. F1000Res. 2016 May 27;5:F1000 Faculty Rev-1015. doi: 10.12688/f1000research.8391.1. PMID: 27303640; PMCID: PMC4890307. 

·       Collins N, Jiang X, Zaid A, Macleod BL, Li J, Park CO, Haque A, Bedoui S, Heath WR, Mueller SN, Kupper TS, Gebhardt T, Carbone FR. Skin CD4(+) memory T cells exhibit combined cluster-mediated retention and equilibration with the circulation. Nat Commun. 2016 May 10;7:11514. doi: 10.1038/ncomms11514. PMID: 27160938; PMCID: PMC4866325. 

·       Mueller SN, Mackay LK. Tissue-resident memory T cells: local specialists in immune defence. Nat Rev Immunol. 2016 Feb;16(2):79-89. doi: 10.1038/nri.2015.3. PMID: 26688350. 

2015

·       Hor JL, Whitney PG, Zaid A, Brooks AG, Heath WR, Mueller SN. Spatiotemporally Distinct Interactions with Dendritic Cell Subsets Facilitates CD4+ and CD8+ T Cell Activation to Localized Viral Infection. Immunity. 2015 Sep 15;43(3):554-65. doi: 10.1016/j.immuni.2015.07.020. Erratum in: Immunity. 2015 Sep 15;43(3):615. PMID: 26297566. 

·       Kato Y, Zaid A, Davey GM, Mueller SN, Nutt SL, Zotos D, Tarlinton DM, Shortman K, Lahoud MH, Heath WR, Caminschi I. Targeting Antigen to Clec9A Primes Follicular Th Cell Memory Responses Capable of Robust Recall. J Immunol. 2015 Aug 1;195(3):1006-14. doi: 10.4049/jimmunol.1500767. PMID: 26101322. 

2014

·       Zhang Q, Dove CG, Hor JL, Murdock HM, Strauss-Albee DM, Garcia JA, Mandl JN, Grodick RA, Jing H, Chandler-Brown DB, Lenardo TE, Crawford G, Matthews HF, Freeman AF, Cornall RJ, Germain RN, Mueller SN*, Su HC*. DOCK8 regulates lymphocyte shape integrity for skin antiviral immunity. J Exp Med. 2014 Dec 15;211(13):2549-66. doi: 10.1084/jem.20141307. PMID: 25422492; PMCID: PMC4267229. 

·       Mueller SN. Skin DCs cluster for efficient T cell activation. Nat Immunol. 2014 Nov;15(11):1004-5. doi: 10.1038/ni.3012. PMID: 25329181. 

·       Macleod BL, Bedoui S, Hor JL, Mueller SN, Russell TA, Hollett NA, Heath WR, Tscharke DC, Brooks AG, Gebhardt T. Distinct APC subtypes drive spatially segregated CD4+ and CD8+ T-cell effector activity during skin infection with HSV-1. PLoS Pathog. 2014 Aug 14;10(8):e1004303. doi: 10.1371/journal.ppat.1004303. PMID: 25121482; PMCID: PMC4133397. 

·       Mueller SN, Zaid A, Carbone FR. Tissue-resident T cells: dynamic players in skin immunity. Front Immunol. 2014 Jul 16;5:332. doi: 10.3389/fimmu.2014.00332. PMID: 25076947; PMCID: PMC4099935. 

·       Zaid A, Mackay LK, Rahimpour A, Braun A, Veldhoen M, Carbone FR, Manton JH, Heath WR, Mueller SN. Persistence of skin-resident memory T cells within an epidermal niche. Proc Natl Acad Sci U S A. 2014 Apr 8;111(14):5307-12. doi: 10.1073/pnas.1322292111. PMID: 24706879; PMCID: PMC3986170. 

2013

·       Mackay LK, Rahimpour A, Ma JZ, Collins N, Stock AT, Hafon ML, Vega-Ramos J, Lauzurica P, Mueller SN, Stefanovic T, Tscharke DC, Heath WR, Inouye M, Carbone FR, Gebhardt T. The developmental pathway for CD103+CD8+ tissue-resident memory T cells of skin. Nat Immunol. 2013 Dec;14(12):1294-301. doi: 10.1038/ni.2744. PMID: 24162776. 

·       Chow Z, Mueller SN, Deane JA, Hickey MJ. Dermal regulatory T cells display distinct migratory behavior that is modulated during adaptive and innate inflammation. J Immunol. 2013 Sep 15;191(6):3049-56. doi: 10.4049/jimmunol.1203205. PMID: 23940277. 

·       Mueller SN. Effector T-cell responses in non-lymphoid tissues: insights from in vivo imaging. Immunol Cell Biol. 2013 Apr;91(4):290-6. doi: 10.1038/icb.2012.75. PMID: 23295362. 

·       Davey GM, Mueller SN, van Vliet C, Gigowski M, Zaid A, Davies B, Carbone FR, Heath WR. Identification of a MHC I-restricted epitope of DsRed in C57BL/6 mice. Mol Immunol. 2013 Apr;53(4):450-2. doi: 10.1016/j.molimm.2012.10.003. PMID: 23142929. 

·       Mueller SN, Gebhardt T, Carbone FR, Heath WR. Memory T cell subsets, migration patterns, and tissue residence. Annu Rev Immunol. 2013;31:137-61. doi: 10.1146/annurev-immunol-032712-095954. PMID: 23215646. 

·       Gebhardt T, Mueller SN, Heath WR, Carbone FR. Peripheral tissue surveillance and residency by memory T cells. Trends Immunol. 2013 Jan;34(1):27-32. doi: 10.1016/j.it.2012.08.008. PMID: 23036434. 

2012

·       Heath WR, Mueller SN. Hair follicles: gatekeepers to the epidermis. Nat Immunol. 2012 Jul 19;13(8):715-7. doi: 10.1038/ni.2374. PMID: 22814342. 

·       Mackay LK, Stock AT, Ma JZ, Jones CM, Kent SJ, Mueller SN, Heath WR, Carbone FR, Gebhardt T. Long-lived epithelial immunity by tissue-resident memory T (TRM) cells in the absence of persisting local antigen presentation. Proc Natl Acad Sci U S A. 2012 May 1;109(18):7037-42. doi: 10.1073/pnas.1202288109. PMID: 22509047; PMCID: PMC3344960. 

·       Mackay LK, Wakim L, van Vliet CJ, Jones CM, Mueller SN, Bannard O, Fearon DT, Heath WR, Carbone FR. Maintenance of T cell function in the face of chronic antigen stimulation and repeated reactivation for a latent virus infection. J Immunol. 2012 Mar 1;188(5):2173-8. doi: 10.4049/jimmunol.1102719. PMID: 22271651; PMCID: PMC3378511.

2011

·       Hubert FX, Kinkel SA, Davey GM, Phipson B, Mueller SN, Liston A, Proietto AI, Cannon PZ, Forehan S, Smyth GK, Wu L, Goodnow CC, Carbone FR, Scott HS, Heath WR. Aire regulates the transfer of antigen from mTECs to dendritic cells for induction of thymic tolerance. Blood. 2011 Sep 1;118(9):2462-72. doi: 10.1182/blood-2010-06-286393. PMID: 21505196. 

·       Gebhardt T, Whitney PG, Zaid A, Mackay LK, Brooks AG, Heath WR, Carbone FR, Mueller SN. Different patterns of peripheral migration by memory CD4+ and CD8+ T cells. Nature. 2011 Aug 14;477(7363):216-9. doi: 10.1038/nature10339. PMID: 21841802. 

·       Lahoud MH, Ahmet F, Kitsoulis S, Wan SS, Vremec D, Lee CN, Phipson B, Shi W, Smyth GK, Lew AM, Kato Y, Mueller SN, Davey GM, Heath WR, Shortman K, Caminschi I. Targeting antigen to mouse dendritic cells via Clec9A induces potent CD4 T cell responses biased toward a follicular helper phenotype. J Immunol. 2011 Jul 15;187(2):842-50. doi: 10.4049/jimmunol.1101176. PMID: 21677141. 

2010

·       Mueller SN, Langley WA, Li G, Garc√≠a-Sastre A, Webby RJ, Ahmed R. Qualitatively different memory CD8+ T cells are generated after lymphocytic choriomeningitis virus and influenza virus infections. J Immunol. 2010 Aug 15;185(4):2182-90. doi: 10.4049/jimmunol.1001142. PMID: 20639484. 

·       Mueller SN, Vanguri VK, Ha SJ, West EE, Keir ME, Glickman JN, Sharpe AH, Ahmed R. PD-L1 has distinct functions in hematopoietic and nonhematopoietic cells in regulating T cell responses during chronic infection in mice. J Clin Invest. 2010 Jul;120(7):2508-15. doi: 10.1172/JCI40040. PMID: 20551512; PMCID: PMC2898584. 

·       Mueller SN, Hickman HD. In vivo imaging of the T cell response to infection. Curr Opin Immunol. 2010 Jun;22(3):293-8. doi: 10.1016/j.coi.2009.12.009. PMID: 20080040. 

·       Kelly RM, Goren EM, Taylor PA, Mueller SN, Stefanski HE, Osborn MJ, Scott HS, Komarova EA, Gudkov AV, Holländer GA, Blazar BR. Short-term inhibition of p53 combined with keratinocyte growth factor improves thymic epithelial cell recovery and enhances T-cell reconstitution after murine bone marrow transplantation. Blood. 2010 Feb 4;115(5):1088-97. doi: 10.1182/blood-2009-05-223198. PMID: 19965631; PMCID: PMC2817635. 

·       Mueller SN, Langley WA, Carnero E, Garcia-Sastre A, Ahmed R. Immunization with live attenuated influenza viruses that express altered NS1 proteins results in potent and protective memory CD8+ T-cell responses. J Virol. 2010 Feb;84(4):1847-55. doi: 10.1128/JVI.01317-09. PMID: 19939929; PMCID: PMC2812357. 

2009

·       Mueller SN, Germain RN. Stromal cell contributions to the homeostasis and functionality of the immune system. Nat Rev Immunol. 2009 Sep;9(9):618-29. doi: 10.1038/nri2588. PMID: 19644499; PMCID: PMC2785037. 

·       Mueller SN, Ahmed R. High antigen levels are the cause of T cell exhaustion during chronic viral infection. Proc Natl Acad Sci U S A. 2009 May 26;106(21):8623-8. doi: 10.1073/pnas.0809818106. PMID: 19433785; PMCID: PMC2688997. 

·       Lay MD, Zhang L, Ribeiro RM, Mueller SN, Belz GT, Davenport MP. Kinetics of major histocompatibility class I antigen presentation in acute infection. J Immunol. 2009 Jan 15;182(2):902-11. doi: 10.4049/jimmunol.182.2.902. PMID: 19124733. 

2008

·       Mueller SN, Ahmed R. Lymphoid stroma in the initiation and control of immune responses. Immunol Rev. 2008 Aug;224:284-94. doi: 10.1111/j.1600-065X.2008.00657.x. Erratum in: Immunol Rev. 2008 Oct;225:333. PMID: 18759934. 

·       Ha SJ, Mueller SN, Wherry EJ, Barber DL, Aubert RD, Sharpe AH, Freeman GJ, Ahmed R. Enhancing therapeutic vaccination by blocking PD-1-mediated inhibitory signals during chronic infection. J Exp Med. 2008 Mar 17;205(3):543-55. doi: 10.1084/jem.20071949. PMID: 18332181; PMCID: PMC2275378. 

2007

·       Mueller SN, Matloubian M, Clemens DM, Sharpe AH, Freeman GJ, Gangappa S, Larsen CP, Ahmed R. Viral targeting of fibroblastic reticular cells contributes to immunosuppression and persistence during chronic infection. Proc Natl Acad Sci U S A. 2007 Sep 25;104(39):15430-5. doi: 10.1073/pnas.0702579104. PMID: 17878315; PMCID: PMC2000533. 

·       Mueller SN, Hosiawa-Meagher KA, Konieczny BT, Sullivan BM, Bachmann MF, Locksley RM, Ahmed R, Matloubian M. Regulation of homeostatic chemokine expression and cell trafficking during immune responses. Science. 2007 Aug 3;317(5838):670-4. doi: 10.1126/science.1144830. PMID: 17673664. 

·       Stock AT, Mueller SN, Kleinert LM, Heath WR, Carbone FR, Jones CM. Optimization of TCR transgenic T cells for in vivo tracking of immune responses. Immunol Cell Biol. 2007 Jul;85(5):394-6. doi: 10.1038/sj.icb.7100076. PMID: 17549072. 

2006

·       Mueller SN, Jones CM, Stock AT, Suter M, Heath WR, Carbone FR. CD4+ T cells can protect APC from CTL-mediated elimination. J Immunol. 2006 Jun 15;176(12):7379-84. doi: 10.4049/jimmunol.176.12.7379. PMID: 16751382. 

2005

·       Li ZN, Mueller SN, Ye L, Bu Z, Yang C, Ahmed R, Steinhauer DA. Chimeric influenza virus hemagglutinin proteins containing large domains of the Bacillus anthracis protective antigen: protein characterization, incorporation into infectious influenza viruses, and antigenicity. J Virol. 2005 Aug;79(15):10003-12. doi: 10.1128/JVI.79.15.10003-10012.2005. PMID: 16014960; PMCID: PMC1181555. 

2004

·       Stock AT, Mueller SN, van Lint AL, Heath WR, Carbone FR. Cutting edge: prolonged antigen presentation after herpes simplex virus-1 skin infection. J Immunol. 2004 Aug 15;173(4):2241-4. doi: 10.4049/jimmunol.173.4.2241. PMID: 15294935. 

2003

·       Mueller SN, Jones CM, Chen W, Kawaoka Y, Castrucci MR, Heath WR, Carbone FR. The early expression of glycoprotein B from herpes simplex virus can be detected by antigen-specific CD8+ T cells. J Virol. 2003 Feb;77(4):2445-51. doi: 10.1128/jvi.77.4.2445-2451.2003. PMID: 12551982; PMCID: PMC141123.

2002

·       Belz GT, Behrens GM, Smith CM, Miller JF, Jones C, Lejon K, Fathman CG, Mueller SN, Shortman K, Carbone FR, Heath WR. The CD8alpha(+) dendritic cell is responsible for inducing peripheral self-tolerance to tissue-associated antigens. J Exp Med. 2002 Oct 21;196(8):1099-104. doi: 10.1084/jem.20020861. PMID: 12391021; PMCID: PMC2194045. 

·       Mueller SN, Heath W, McLain JD, Carbone FR, Jones CM. Characterization of two TCR transgenic mouse lines specific for herpes simplex virus. Immunol Cell Biol. 2002 Apr;80(2):156-63. doi: 10.1046/j.1440-1711.2002.01071.x. PMID: 11940116. 

·       Mueller SN, Jones CM, Smith CM, Heath WR, Carbone FR. Rapid cytotoxic T lymphocyte activation occurs in the draining lymph nodes after cutaneous herpes simplex virus infection as a result of early antigen presentation and not the presence of virus. J Exp Med. 2002 Mar 4;195(5):651-6. doi: 10.1084/jem.20012023. PMID: 11877488; PMCID: PMC2193766. 

·       Coles RM, Mueller SN, Heath WR, Carbone FR, Brooks AG. Progression of armed CTL from draining lymph node to spleen shortly after localized infection with herpes simplex virus 1. J Immunol. 2002 Jan 15;168(2):834-8. doi: 10.4049/jimmunol.168.2.834. PMID: 11777979.   

Book Chapters  

·       Mueller SN, Rouse BT. Host defences to Viruses. Chapter 25. In: Clinical Immunology 6h edition. 2023. 320-330.  

·       Rouse BT, Mueller SN. Host defences to Viruses. Chapter 25. In: Clinical Immunology 5th edition. 2019. 365-374.  

·       Rouse BT, Mueller SN. Host defences to Viruses. Chapter 27. In: Clinical Immunology 4th edition. 2013. 345-355. 

·       Mueller SN, Rouse BT. Immune responses to viruses. Chapter 27. In: Clinical Immunology 3rd edition.  2008. 421-431.